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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">nnp</journal-id><journal-title-group><journal-title xml:lang="en">Neurology, Neuropsychiatry, Psychosomatics</journal-title><trans-title-group xml:lang="ru"><trans-title>Неврология, нейропсихиатрия, психосоматика</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2074-2711</issn><issn pub-type="epub">2310-1342</issn><publisher><publisher-name>"IMA-Press", LLC</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.14412/2074-2711-2025-6-61-68</article-id><article-id custom-type="elpub" pub-id-type="custom">nnp-2739</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>ORIGINAL INVESTIGATIONS</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ОРИГИНАЛЬНЫЕ ИССЛЕДОВАНИЯ И МЕТОДИКИ</subject></subj-group></article-categories><title-group><article-title>A bioinformatics driven map of pharmacogenomic variation and genetic variants in Alzheimer’s disease therapy</article-title><trans-title-group xml:lang="ru"><trans-title>A bioinformatics driven map of pharmacogenomic variation and genetic variants in Alzheimer’s disease therapy</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-4256-6534</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Amukti</surname><given-names>D. P.</given-names></name><name name-style="western" xml:lang="en"><surname>Amukti</surname><given-names>D. P.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Danang Prasetyaning Amukti - Department of Pharmacy, Faculty of Medicine and Health Science.</p><p>Jl. Brawijaya No.99, Tamantirto, Kasihan, Bantul, Yogyakarta, 55183</p></bio><bio xml:lang="en"><p>Danang Prasetyaning Amukti - Department of Pharmacy, Faculty of Medicine and Health Science.</p><p>Jl. Brawijaya No.99, Tamantirto, Kasihan, Bantul, Yogyakarta, 55183</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-3554-9039</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Kusumawardani</surname><given-names>N.</given-names></name><name name-style="western" xml:lang="en"><surname>Kusumawardani</surname><given-names>N.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Department of Pharmacy, Faculty of Medicine and Health Science.</p><p>Jl. Brawijaya No.99, Tamantirto, Kasihan, Bantul, Yogyakarta, 55183</p></bio><bio xml:lang="en"><p>Jl. Brawijaya No.99, Tamantirto, Kasihan, Bantul, Yogyakarta, 55183</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0706-8687</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Estiningsih</surname><given-names>D.</given-names></name><name name-style="western" xml:lang="en"><surname>Estiningsih</surname><given-names>D.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Department of Pharmacy, Faculty of Medicine and Health Science.</p><p>Jl. Brawijaya No.99, Tamantirto, Kasihan, Bantul, Yogyakarta, 55183</p></bio><bio xml:lang="en"><p>Jl. Brawijaya No.99, Tamantirto, Kasihan, Bantul, Yogyakarta, 55183</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-3095-1360</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Herlina</surname><given-names>T.</given-names></name><name name-style="western" xml:lang="en"><surname>Herlina</surname><given-names>T.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Department of Pharmacy, Faculty of Medicine and Health Science.</p><p>Jl. Brawijaya No.99, Tamantirto, Kasihan, Bantul, Yogyakarta, 55183</p></bio><bio xml:lang="en"><p>Jl. Brawijaya No.99, Tamantirto, Kasihan, Bantul, Yogyakarta, 55183</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-2486-1505</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Nurinda</surname><given-names>Е.</given-names></name><name name-style="western" xml:lang="en"><surname>Nurinda</surname><given-names>E.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Department of Pharmacy, Faculty of Medicine and Health Science.</p><p>Jl. Brawijaya No.99, Tamantirto, Kasihan, Bantul, Yogyakarta, 55183</p></bio><bio xml:lang="en"><p>Jl. Brawijaya No.99, Tamantirto, Kasihan, Bantul, Yogyakarta, 55183</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0009-0003-6632-2504</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Indah Pratami</surname><given-names>R.</given-names></name><name name-style="western" xml:lang="en"><surname>Indah Pratami</surname><given-names>R.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Faculty of Pharmacy.</p><p>Jl. Kapas 9, Semaki, Umbulharjo, Yogyakarta 55166</p></bio><bio xml:lang="en"><p>Faculty of Pharmacy.</p><p>Jl. Kapas 9, Semaki, Umbulharjo, Yogyakarta 55166</p></bio><xref ref-type="aff" rid="aff-2"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Alma Ata University</institution><country>Индонезия</country></aff><aff xml:lang="en"><institution>Alma Ata University</institution><country>Indonesia</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Ahmad Dahlan University</institution><country>Индонезия</country></aff><aff xml:lang="en"><institution>Ahmad Dahlan University</institution><country>Indonesia</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2025</year></pub-date><pub-date pub-type="epub"><day>20</day><month>12</month><year>2025</year></pub-date><volume>17</volume><issue>6</issue><fpage>61</fpage><lpage>68</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Amukti D.P., Kusumawardani N., Estiningsih D., Herlina T., Nurinda E., Indah Pratami R., 2025</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="ru">Amukti D.P., Kusumawardani N., Estiningsih D., Herlina T., Nurinda Е., Indah Pratami R.</copyright-holder><copyright-holder xml:lang="en">Amukti D.P., Kusumawardani N., Estiningsih D., Herlina T., Nurinda E., Indah Pratami R.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://nnp.ima-press.net/nnp/article/view/2739">https://nnp.ima-press.net/nnp/article/view/2739</self-uri><abstract><p>Alzheimer’s disease (AD) is a progressive neurodegenerative disorder that is the leading cause of dementia globally. First-line AD therapy using cholinesterase inhibitors such as donepezil, galantamine, and rivastigmine shows interindividual variation in effectiveness, indicating the involvement of genetic factors. This study aims to identify genetic variants that influence response to AD therapy through bioinformatics and pharmacogenomic approaches. Data were retrieved from PharmGKB and analyzed based on therapy efficacy, allele frequencies across populations (1000 Genomes), and gene expression (GTEx). Four SNP variants were found to be relevant: rs6494223 (CHRNA7), rs3793790 and rs2177370 (CHAT), and rs1803274 (BCHE). Specific genotypes such as CC (rs6494223), GG and AA (CHAT), and TT (rs1803274) showed better therapy response. Expression analysis showed that the CHAT gene is highly expressed in the brain, reinforcing its pharmacogenetic relevance. In contrast, CHRNA7 and BCHE showed high expression in non-neuronal tissues, yet still play a systemic role in acetylcholine metabolism. Variations in allele frequencies between populations were also identified, underscoring the importance of population-based therapeutic approaches. These results support the importance of simple genetic screening in the development of precision therapies for Alzheimer’s. This study demonstrates that integrating pharmacogenomic and gene expression data can provide a better understanding of the heterogeneity of AD therapy response and open the possibility of personalized treatment based on the patient’s genetic profile.</p></abstract><trans-abstract xml:lang="ru"><p>Alzheimer’s disease (AD) is a progressive neurodegenerative disorder that is the leading cause of dementia globally. First-line AD therapy using cholinesterase inhibitors such as donepezil, galantamine, and rivastigmine shows interindividual variation in effectiveness, indicating the involvement of genetic factors. This study aims to identify genetic variants that influence response to AD therapy through bioinformatics and pharmacogenomic approaches. Data were retrieved from PharmGKB and analyzed based on therapy efficacy, allele frequencies across populations (1000 Genomes), and gene expression (GTEx). Four SNP variants were found to be relevant: rs6494223 (CHRNA7), rs3793790 and rs2177370 (CHAT), and rs1803274 (BCHE). Specific genotypes such as CC (rs6494223), GG and AA (CHAT), and TT (rs1803274) showed better therapy response. Expression analysis showed that the CHAT gene is highly expressed in the brain, reinforcing its pharmacogenetic relevance. In contrast, CHRNA7 and BCHE showed high expression in non-neuronal tissues, yet still play a systemic role in acetylcholine metabolism. Variations in allele frequencies between populations were also identified, underscoring the importance of population-based therapeutic approaches. These results support the importance of simple genetic screening in the development of precision therapies for Alzheimer’s. This study demonstrates that integrating pharmacogenomic and gene expression data can provide a better understanding of the heterogeneity of AD therapy response and open the possibility of personalized treatment based on the patient’s genetic profile.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>Alzheimer’s disease</kwd><kwd>SNP</kwd><kwd>pharmacogenomics</kwd><kwd>CHRNA7</kwd><kwd>CHAT</kwd><kwd>BCHE</kwd></kwd-group><kwd-group xml:lang="en"><kwd>Alzheimer’s disease</kwd><kwd>SNP</kwd><kwd>pharmacogenomics</kwd><kwd>CHRNA7</kwd><kwd>CHAT</kwd><kwd>BCHE</kwd></kwd-group><funding-group><funding-statement xml:lang="ru">Исследование не имело спонсорской поддержки</funding-statement><funding-statement xml:lang="en">The investigation has not been sponsored</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Stotani S, Giordanetto F, Medda F. 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